Primer Pairs Specificity Test for Frog Meat Identification Using PCR Technique
Norman Yoshi Haryono(1*), Rizqi Layli Khusufi(2), Delia Wahyu Pangesti(3), Evi Susanti(4), Rina Rifqie Mariana(5), Hartati Eko Wardani(6), Norazlinaliza Salim(7)
(1) Biotechnology Study Program, Department of Applied Science, Faculty of Mathematics and Natural Sciences, Universitas Negeri Malang, Jl. Semarang No. 5, Malang 65145, Indonesia; Health and Food Centre, Institute of Research and Community Services, Universitas Negeri Malang, Jl. Semarang No. 5, Malang 65145, Indonesia
(2) Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Negeri Malang, Jl. Semarang No. 5, Malang 65145, Indonesia
(3) Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Negeri Malang, Jl. Semarang No. 5, Malang 65145, Indonesia
(4) Biotechnology Study Program, Department of Applied Science, Faculty of Mathematics and Natural Sciences, Universitas Negeri Malang, Jl. Semarang No. 5, Malang 65145, Indonesia; Department of Chemistry, Faculty of Mathematics and Natural Sciences, Universitas Negeri Malang, Jl. Semarang No. 5, Malang 65145, Indonesia
(5) Department of Culinary Arts, Faculty of Engineering, Universitas Negeri Malang, Jl. Semarang No. 5, Malang 65145, Indonesia
(6) Department of Public Health, Faculty of Sport Sciences, Universitas Negeri Malang, Jl. Semarang No. 5, Malang 65145, Indonesia
(7) Laboratory of Halal Science Research, Halal Products Research Institute, Universiti Putra Malaysia, 43300 UPM Serdang, Selangor, Malaysia; Centre of Foundation Studies for Agricultural Science, Universiti Putra Malaysia, 43300 UPM Serdang, Selangor, Malaysia
(*) Corresponding Author
Abstract
Halal food assurance is becoming more important with the growth of the halal industry globally. Adulteration of halal meat products using non-halal sources such as pork, dog, boar, and even frog meat has become a major problem for moslems. The purpose of this study is to initiate the method for frog meat identification using polymerase chain reaction (PCR) technique. In this study, three primer pairs (Fk1-Rk1, Fk2-Rk2, Fk3-Rk3) were analyzed for their specificity toward frog meat against other common halal meat sources such as beef, chicken, shrimp, squid, and mackerel. The visualization of DNA amplification showed that primer pair Fk1-Rk1 produced primer-dimer, thus cannot be used for this circumstance. Primer pair Fk2-Rk2 showed a better result where DNA amplicon was produced at ~100 bp for frog meat and no amplicons for other meat. Primer pair Fk3-Rk3 showed a different pattern of DNA amplification for all the meat tested, where the amplicon of frog meat was shown at ~100 bp, while the other meat showed multiple amplicons or none. In conclusion, primer pairs Fk2-Rk2 and Fk3-Rk3 showed their potential as primer pairs for frog meat identification using PCR for implementing halal food assurance, although sensitivity analysis needs to be investigated.
Keywords
Full Text:
Full Text PDFReferences
[1] Denyingyhot, A., Srinulgray, T., Mahamad, P., Ruangprach, A., Sa-I, S., Saerae, T., Vesaratchavest, M., Dahlan, W., and Keeratipibul, S., 2022, Modern on-site tool for monitoring contamination of halal meat with products from five non-halal animals using multiplex polymerase chain reaction coupled with DNA strip, Food Control, 132, 108540.
[2] Halimi, F.F., Gabarre, S., Rahi, S., Al-Gasawneh, J.A., and Ngah, A.H., 2022, Modelling Muslims’ revisit intention of non-halal certified restaurants in Malaysia, J. Islam. Mark., 13 (1), 2437–2461.
[3] Thomson Reuters, 2014, State of the global Islamic economy 2014-2015 report, Thomson Reuters, Dubai.
[4] Esteki, M., Regueiro, J., and Simal-Gándara, J., 2019, Tackling fraudsters with global strategies to expose fraud in the food chain, Compr. Rev. Food Sci. Food Saf., 18 (2), 425–440.
[5] Huq, A.K.O., Uddin, I., Ahmed, E., Shiddique, M.A.B., Zaher, M.A., and Nigar, S., 2017, Fats and oil adulteration: present scenario and rapid detection techniques, Food Res., 6 (1), 5–11.
[6] Montowska, M., and Pospiech, E., 2011, Authenticity determination of meat and meat products on the protein and DNA basis, Food Rev. Int., 27 (1), 84–100.
[7] Ali, M.E., Nina Naquiah, A.N., Mustafa, S., and Hamid, S.B.A., 2015, Differentiation of frog fats from vegetable and marine oils by Fourier transform infrared spectroscopy and chemometric analysis, Croat. J. Food Sci. Technol., 7 (1), 1–8.
[8] Bleicher, J., Ebner, E.E., and Bak, K.H., 2022, Formation and analysis of volatile and odour compounds in meat-A review, Molecules, 27 (19), 6703.
[9] Flores, M., 2017, “Chapter 13 - The Eating Quality of Meat: III-Flavor” in Lawrie’s Meat Science, 8th Ed., Eds. Toldra´, F., Woodhead Publishing, UK, 383–417.
[10] Montowska, M., Rao, W., Alexander, M.R., Tucker, G.A., and Barrett, D.A., 2014, Tryptic digestion coupled with ambient desorption electrospray ionization and liquid extraction surface analysis mass spectrometry enabling identification of skeletal muscle proteins in mixtures and distinguishing between beef, pork, horse, chicken, and turkey meat, Anal. Chem., 86 (9), 4479–4487.
[11] Članjak – Kudra, E., Fazlović, N., Alagić, D., Smajlović, M., Čaklovica, K., and Smajlović, A., 2021, An overview of most commonly used methods for detection of fish mislabeling, Veterinaria, 70 (2), 169–184.
[12] Rohman, A., Pebriyanti, N.W., Sismindari, S., Windarsih, A., Ramadhani, D., Larasati, R., and Yulisa, H., 2020, Real-time polymerase chain reaction for identification of dog meat in adulterated beef meatball using specific primer targeting on cytochrome-b for halal authentication, Int. J. Food Prop., 23 (1), 2231–2241.
[13] Thanakiatkrai, P., and Kitpipit, T., 2017, Meat species identification by two direct-triplex real-time PCR assays using low resolution melting, Food Chem., 233, 144–150.
[14] Thanakiatkrai, P., Dechnakarin, J., Ngasaman, R., and Kitpipit, T., 2019, Direct pentaplex PCR assay: An adjunct panel for meat species identification in Asian food products, Food Chem., 271, 767–772.
[15] Rowe, G., and Beebee, T.J.C., 2001, polymerase chain reaction primers for microsatellite loci in the common frog Rana temporaria, Mol. Ecol. Notes, 1 (1-2), 6–7.
[16] Farag, M.R., El Bohi, K.M., Khalil, S.R., Alagawany, M., Arain, M.A., Sarun, K., Tiwari, R., and Dhama, K., 2020, Forensic applications of mitochondrial cytrochrome b gene in the identification of domestic and wild animal species, J. Exp. Biol. Agric. Sci., 8 (1), 1–8.
[17] Yacoub, H.A., Fathi, M.M., and Mahmoud, W.M., 2013, DNA barcode through cytochrome b gene information of mtDNA in native chicken strains, Mitochondrial DNA, 24 (5), 528–537.
[18] Ruan, H., Li, M., Li, Z., Huang, J., Chen, W., and Zou, K., 2020, Comparative analysis of complete mitochondrial genomes of three Gerres fishes (Perciformes: Gerreidae) and primary exploration of their evolution history, Int. J. Mol. Sci., 21 (5), 1874.
[19] Paz, F.P., Batista, J.D., and Porto, J.I., 2014, DNA barcodes of Rosy Tetras and allied species (Characiformes: Characidae: Hyphessobyrcon) from Brazilian Amazon basin, PLoS One, 9 (5), 0098603.
[20] Sun, C.H., Liu, H.Y., Xu, N., Zhang, X.L., Zhang, Q., and Han, B.P., 2021, Mitochondrial genome structures and phylogenetic analyses of two tropical Characidae fishes, Front. Genet., 12, 627402.
[21] Ni’mah, A., Kartikasari, Y., Pratama, A.D., Kartikasari, L.R., Hertanto, B.S., and Cahyadi, M., 2016, Detection of pork contamination in fresh and cooked beef using genetic marker mitochondrial-DNA cytochrome b by duplex-PCR, J. Indones. Trop. Anim. Agric., 41 (1), 7–12.
[22] Chang, H., Guo, J., Li, M., Gao, Y., Wang, S., Wang, X., and Liu, Y., 2023, Comparative genome and phylogenetic analysis revealed the complex mitochondrial genome and phylogenetic position of Conopomorpha sinensis Bradley, Sci. Rep., 13 (1), 4989.
[23] Gemayel, R., Cho, J., Boeynaems, S., and Verstrepen, K.J., 2012, Beyond junk-variable tandem repeats as facilitators of rapid evolution of regulatory and coding sequences, Genes, 3 (3), 461–480.
[24] Burpo, F.J., 2001, A critical review of PCR primer design algorithms and cross-hybridization case study, Biochemistry, 218, 1–11.
[25] Sasmito, D.E.K., Kurniawan, R., and Muhimmah, L., 2014, Karakteristik primer pada polymerase chain reaction (PCR) untuk sekuensing DNA: Mini review, Seminar Nasional Informatika Medis, Faculty of Industrial Technologi, UII, Yogyakarta, December 6, 2014, 93–102.
[26] Ishii, S., and Sadowsky, M.J., 2009, Application of the rep-PCR DNA fingerprinting technique to study microbial diversity, ecology and evolution, Environ. Microbiol., 11 (4), 733–740.
[27] Lee, A., and Wong, E., 2009, Optimization and the robustness of BOX AIR PCR for DNA fingerprinting using trout lake E. coli isolates, J. Exp. Microbiol. Immunol., 13, 104–113.
[28] Udvardi, M.K., Czechowski, T., and Scheible, W.R., 2008, Eleven golden rules of quantitative RT-PCR, Plant Cell, 20 (7), 1736–1737.
DOI: https://doi.org/10.22146/ijc.83626
Article Metrics
Abstract views : 1205 | views : 901Copyright (c) 2023 Indonesian Journal of Chemistry
This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
Indonesian Journal of Chemistry (ISSN 1411-9420 /e-ISSN 2460-1578) - Chemistry Department, Universitas Gadjah Mada, Indonesia.
View The Statistics of Indones. J. Chem.