Identification of Gene Diversity of Melanocortin 4 Receptor for Commercial Rabbit Breeds

https://doi.org/10.21059/buletinpeternak.v49i1.99303

Firda Tasya Kamila(1), Mamat Hamidi Kamalludin(2), Sutopo Sutopo(3), Dela Ayu Lestari(4), Enny Tantini Setiatin(5), Ananda Dwi Agustine(6), Alfa Putri Latifa(7), Zata Nabilah(8), Syaddad Verahry Philco(9), Asep Setiaji(10*)

(1) Department of Animal Science, Faculty of Animal and Agricultural Science, Universitas Diponegoro, Jl. Prof Sudarto SH, Tembalang, Semarang 50275, Central Java, Indonesia
(2) Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia UPM, Serdang, Selangor, 43400, Malaysia
(3) Department of Animal Science, Faculty of Animal and Agricultural Science, Universitas Diponegoro, Jl. Prof Sudarto SH, Tembalang, Semarang 50275, Central Java, Indonesia
(4) Department of Animal Science, Faculty of Animal and Agricultural Science, Universitas Diponegoro, Jl. Prof Sudarto SH, Tembalang, Semarang 50275, Central Java, Indonesia
(5) Department of Animal Science, Faculty of Animal and Agricultural Science, Universitas Diponegoro, Jl. Prof Sudarto SH, Tembalang, Semarang 50275, Central Java, Indonesia
(6) Department of Animal Science, Faculty of Animal and Agricultural Science, Universitas Diponegoro, Jl. Prof Sudarto SH, Tembalang, Semarang 50275, Central Java, Indonesia
(7) Department of Animal Science, Faculty of Animal and Agricultural Science, Universitas Diponegoro, Jl. Prof Sudarto SH, Tembalang, Semarang 50275, Central Java, Indonesia
(8) Department of Animal Science, Faculty of Animal and Agricultural Science, Universitas Diponegoro, Jl. Prof Sudarto SH, Tembalang, Semarang 50275, Central Java, Indonesia
(9) Department of Animal Science, Faculty of Animal and Agricultural Science, Universitas Diponegoro, Jl. Prof Sudarto SH, Tembalang, Semarang 50275, Central Java, Indonesia
(10) Department of Animal Science, Faculty of Animal and Agricultural Science, Universitas Diponegoro, Jl. Prof Sudarto SH, Tembalang, Semarang 50275, Central Java, Indonesia
(*) Corresponding Author

Abstract


Molecular genetic markers are regularly implemented in rabbit management for better breeding by selecting for specific genotypes. This study aimed to examine the diversity of the melanocortin-4 receptor gene in rabbits in Central Java, Indonesia. A total of 35 bucks were used in this study, comprising 10 New Zealand White, 11 Hyla and 14 Hycole. The DNA was extracted by Gene JET Whole Blood Genomic DNA extraction kit. Single Nucleotide Polymorphism (SNP) was detected by Polymerase Chain Reaction (PCR) and DNA sequencing. Hot carcass weight, cold carcass weight, reference weight and cut point 1-5 weight were among the parameters that were measured. This study showed that Melanocortin 4 Receptor (MC4R) genes were polymorphic, containing missense mutations and one SNP at 519G→A SNP 519GA had two alleles, A and G, with three genotypes (AA, GG, and AG). The rabbit population did not achieve HardyWeinberg Equilibrium (HWE) and showed a low level of genetic diversity as indicated by the heterozygosity results. The result of this study concluded that the frecuency AG as a genotype was higher than either GG or AA and A had a higher allele frequency than G. We recommended improving the validity of the data across various rabbit populations


Keywords


Commercial rabbits; Diversity; MC4R Gene; SNP.

Full Text:

5. Asep Setiaji


References

Albakri M. W., L. E. Anugratama, Panjono, and T. Hartatik. 2022. Identification of gene diveristy of melanocortin-4 receptor and its relationship with the birth and body size of beef cattle. 3rd International Conference on Advance and Scientific Innovation ICASI-Life Sciences Chapter. KNE Life Sciences. 453-464. DOI: 10.18502/kls.v0i0.11831

Allendorf, F.W., G. Luikar, S.N. Aitken. 2013. Conservation and the genetics of population. 2nd ed. Oxford (UK): Wiley-Blackwell.

Cullere M. and D. Zotte. 2018. Rabbit meat production and consumption: state of knowledge and future perspectives. Meat. Sci. 143: 137-146. DOI: 10.1016/j.meatsci.2018.04.029

Czerniawska-Piątkowska, E., and Kowalewska-Łuczak, I. 2020. Effect of polymorphism in the 5’promoter region of the TG gene on the milk production traits of Polish Holstein-Friesian cattle. Animal Science and Genetics 16: 9-16. DOI: 10.5604/01.3001.0014.0506

Dalle Zotte A., M. Cullere, L. Alberghini, P. Catellani, and G. Paci. 2016. Proximate composition, fatty acid profile, and heme iron and cholesterol content of rabbit meat as affected by sire breed, season, parity order, and gender in an organic production system. Czech. J. Anim. Sci. 61: 383-390. DOI: 10.17221/24/2016-CJAS

Edea, Z., M. S. A. Bhuiyan, T. Dessie, M. F. Rothschild, H. Dadi, and K. S. Kim. 2015. Genome-wide genetic diversity, population structure and admixture analysis in African and Asian cattle breeds. Animal. 9: 218-226. DOI: 10.1017/S1751731114002560

El-Sabrout K. 2017. Associations between single nucleotide polymorphisms of melanocortin gene and sexual desire behavior in rabbit (Oryctolagus cuniculus). J. Vet. Behav. 19: 69-71. DOI: 10.1016/j.jveb.2017.02

Ezema C. and D.C. Eze. 2015. Growth performance and cost benefit of weaner rabbits fed diet supplemented with probiotiv in the tropics. Pak. J. Nutr. 14: 47-49. DOI: 10/3923/pjn.2015.47.49

Fontanesi L., K. Cisarova, E. Scotti, and S. Dall’Olio. 2013. A missense mutation in the rabbit melanocortin 4 receptor (MC4R) gene is asscoiated with finisching weight in a mea rabbit line. J. Anim. Bio. 24: 268-277. DOI: 10.1080/10495398.2013.781034

Hirose K., T. Ito, K. Fukaw, A. Arakawa, S. Mikawa, Y. Hayashi, and K. Tanaka. 2014. Evaluation of effects of multiple candidate genes (LEP, LEPR, MC4R, PIK3C3, and VRTN) on production traits in Duroc pigs. J. Anim. Sci. 85: 198-206. DOI: 10.1111/asj.12134

Howard, J. T., J. E. C. Pryce, Baes, and C. Maltecca. 2017. Invited review: Inbreeding in the genomics era: Inbreeding, inbreeding depression, and management of genomic variability. Journal of Dairy Science 100: 6009-6024. DOI: 10.3168/jds.2017-12787

Jiang M. S., S. Y. Chen, S. J. Lai, X. S. Deng, Y. Chen, and J. Wan. 2008. Association between single nucleotide polymorphism of MC4R gene and carcass traits in rabbits. Yi Chuan. 30: 1574-1578. DOI: 10.3724/sp.j.1005.2008.01574

Khorwal, D., G. K. Mathur, U. Ahmed, S. S. Daga. 2024. Environmental factors affecting the concentration of dna in blood and saliva stains: a review. J. Forensic Sci. 8: 009-015. DOI: 10.29328/journal.jfsr.1001057

Lonneti A., M.C. Fontana, G. Martinelli, I. Lacobucci. 2016. Single Nucleotide Polymorphisms As Genomic Markers for High-Throughput Pharmacogenomic Studies. In Microarray Technology. Humana Press, New York.

Martins C, M. Cullere, A. Dalle Zotte, C. Cardoso, S. P. Alves, R. J. B. Bessa, J. P. B. Freire, and L. Falcão-e-Cunha. 2018. Incorporation of two levels of black soldier fly (Hermetia illucens L.) larvae fat or extruded linseed in diets of growing rabbits: Effects on growth performance and diet digestibility. Czech. J. Anim. Sci. 63: 356-362. DOI: 10.17221/22/2018-CJAS

Mohamed M. A., M. El Sherbeny, and D. A. Farag. 2020. A comparative study of two gel-based techniques to detect the relationship between post-mortem interval and nuclear DNA degradation in different tissues In Albino rats. Egypt. Dent. J. 66 :175–186. DOI: 10.21608/edj.2020.77533

Nei M. and S. Kumar. 2000. Molecular Evolution and Phylogenetics. Oxford University Press. Inc., New York.

Nei, M. 1987. Molecular evolutionary genetics. Columbia University Press, New York.

Owour S. A., G. M. Edward, and W. K. Remmy. 2019. Origin, genetic diveristy, and population structure of rabbits (Oryctolagus cuniculus) in Kenya. Biomed. Res. Int. 6: 1-6. DOI:10.1155/2019/7056940

Prasetyo M. A. and G. E. Sanjaya. 2023. Identifikasi DNA daging babi dan daging sapi menggunakan metode Polymerase Chain Reaction dalam industri makanan. J. Helathcare Technology and Medicine 9: 1024-1030. DOI: 10.33143/jhtm.v9i2.3344 [Indonesian]

Radwan H. A., A. I. Ateya, E. A. A. Elfadi, S. A. Sakr, M. M. Fouda, R. A. Darwish, and A. E. El-Desoky. 2022. MC4R gene polymorphisms for classification of growth efficiency and carcass measurments in two rabbit breeds in Egypt. S Afr J Anim Sci. 52: 743-756. DOI: 10.4314/sajas.v52i6.02

Setiaji A., D. A. Lestari, E. Kurnianto, and S. Sutopo. 2022. Morphometric traits of imported rabbits and their progenies. J. Adv. Vet. Res. 12:217–220.

Siddiqui S. A., F. Gerini, A. Ikram, F. Saeed, X. Feng, and Y. Chen. 2023. Rabbit meat-production, consumption and consumers’ attitudes and behavior. Sustainability 15: 1-13. DOI: 10.3390/su15032008

Singh U., D. R. A. Rajib Rafeeque, A. Rani, K. Sushil, C. Sandip, D. Kuldeep, and S. Arjava. 2014. Molecular markers and their applications in cattle genetic research: a review. Biomarkers and Genomic Medicine. DOI: 10.1016/j.bgm.2014.03.001

Sternstein I., M. Reissmann, D. Maj, J. Bieniek, and G. A. Brockmann. 2014. A new single nucleotide polymorphism in the rabbit



DOI: https://doi.org/10.21059/buletinpeternak.v49i1.99303

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