Partially Purified L-asparaginase with Low Glutaminase and Urease Co-Activities of Bacteria from the Rancabuaya Coast, Indonesia
Abstract
L-asparaginase, enzyme that can hydrolyses L-asparagine into L-aspartate and ammonia is used as a therapeutic enzyme in treating Acute Lymphoblastic Leukemia (ALL). The use of this enzyme is restricted by the presence of dual substrate specificity towards asparagine and glutamine, which causes side effects. The objectives of this research are to isolate and to identify marine bacteria from Rancabuaya Coast that generate L-asparaginase with low glutaminase and urease co-activity and to produce and to measure the asparaginase activity using the Nessler reagent. Bacteria were isolated from seawater, and screened using Zobell Marine media containing either L-asparagine, glutamine or urea, with phenol red as an indicator. The bacterial isolate with the highest asparaginase activity and relatively lower glutaminase and urease activity, was identified by 16S rRNA gene sequence. This bacterial isolate, RB3, was identified as Pseudoalteromonas tetraodonis GFC with greater than 99 % homology. Enzyme specific activity of crude extracellular and intracellular enzyme were 72.30 U mg-1 and 67.18 U mg-1 respectively, while the highest enzyme specific activity from ammonium sulphate fractionation was found at 40-60% saturation (F3), which was 136.03 U mg-1. SDS-PAGE of the enzyme solutions showed the presence of a 35 kDa band suspected to be the L-asparaginase protein.
References
Alrumman, S.A. et al., 2019. Production and anticancer activity of an L-asparaginase from Bacillus licheniformis isolated from the Red Sea, Saudi Arabia. Scientific Reports, 9(1), 3756. doi: 10.1038/s41598-019-40512-x
Altschul, S.F. et al., 1990. Basic local alignment search tool. Journal of Molecular Biology, 215(3), pp.403-410. doi: 10.1016/S0022-2836(05)80360-2
Apollos, W.P. et al., 2017. Molecular Characterization and Phylogenetic Analysis of Some Agaricomycetes (Mushroom) Fungi from Kogi State, Central Nigeria. International Journal of Sciences: Basic and Applied Research (IJSBAR), 35(2), pp.276-292.
Arima, K. et al., 1972. Production of extracellular L-asparaginases by microorganisms. Agricultural and Biological Chemistry, 36(3), pp.356-361. doi: 10.1080/00021369.1972.10860270
Arpintasari, A. et al., 2008. Isolasi dan Uji Potensi L-Asparaginase dari Rimpang Kunyit Putih (Curcuma mangga Vall) terhadap Leukimia Tipe K562. Jurnal Kimia Sains dan Aplikasi, 11(3), pp.57-62.
Ashok, A. et al., 2019. Microbes Producing L-Asparaginase free of Glutaminase and Urease isolated from Extreme Locations of Antarctic Soil and Moss. Scientific Reports, 9(1), 1423. doi: 10.1038/s41598-018-38094-1
BacDive, 2024. Pseudoalteromonas tetraodonis GFC is an obligate aerobe, psychrophilic, Gram-negative animal pathogen that was isolated from skin slime of pufferfish. Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures. doi: 10.1093/nar/gkab961
Baker, G.C. et al., 2001. Bacterial community analysis of Indonesian hot springs. FEMS Microbiology Letters, 200(1), pp.103-109. doi: 10.1111/j.1574-6968.2001.tb10700.x
Bano, M. & Sivaramakrishnan, V.M., 1980. Preparation and properties of L-asparaginase from green chillies (Capsicum annum L.). Journal of Biosciences, 2(4), pp.291-297.
Batool, T. et al., 2016. A Comprehensive review on Lasparaginase and its applications. Applied Biochemistry and Biotechnology, 178(5), pp.900-923. doi: 10.1007/s12010-015-1917-3
Byrne, R.H. & Mackenzie, F.T., 2024, 'Seawater', in Britannica, viewed from https://www.britannica.com/science/seawater
Chakraborty, M. & Shivakumar, S., 2021. Bioprospecting of the agaricomycete Ganoderma australe GPC191 as novel source for l-asparaginase production. Scientific Reports, 11, 6192. doi: 10.1038/s41598-021-84949-5
Dantas, R.C. et al., 2019. Expression of a recombinant bacterial l-asparaginase in human cells. BMC Research Notes, 12(1), pp.4-9. doi: 10.1186/s13104-019-4836-5
Doriya, K. & Kumar, D.S., 2016. Isolation and screening of L-asparaginase free of glutaminase and urease from fungal sp. 3 Biotech, 6(2), 239. doi: 10.1007/s13205-016-0544-1
Duong-Ly, K.C. & Gabelli, S.B., 2014. Chapter Seven - Salting out of Proteins Using Ammonium Sulphate Precipitation. Methods in Enzymology, 541(2014), pp.85-94. doi: 10.1016/B978-0-12-420119-4.00007-0
Gaffar, S., Maksum, I.P. & Julaeha, E., 2014. Identifikasi populasi bakteri dalam spons pencuci piring dengan metode Pcr-Rflp Identification of bacteria population in dishwashing sponge using pcr-rflp method. Chimica et Natura Acta, 2(2), pp.120-125. doi: 10.24198/cna.v2.n2.9154
Gunawan, H.V., 2017. Aktivitas antibakteri ekstrak daun dan bunga jotang (spilanthes paniculata) terhadap bakteri Escherichia coli dan Lactobacillus acidophillus. Universitas Atma Jaya Yogyakarta.
Hagström, Å. et al., 2002. Use of 16S ribosomal DNA for delineation of marine bacterioplankton species. Applied and Environmental Microbiology, 68(7), pp.3628-3633. doi: 10.1128/AEM.68.7.3628-3633.2002
Hassanshahian, M. & Jafar, M., 2011. Isolation and Characterization of Halobacterium salinarum from Saline Lakes in Iran. Jundishapur Journal of Microbiology, 4(12), pp.59-65.
Hidayatulloh, A. et al., 2019. Potensi senyawa metabolit yang dihasilkan Lactobacillus plantarum atcc 8014 sebagai bahan biopreservasi dan anti bakteri pada bahan pangan asal hewan. Jurnal Ilmu dan Teknologi Peternakan, 7(2), pp.1-6. doi: 10.20956/jitp.v7i2.6811
Ivanova, E.P. et al., 2001. Retrieval of the species Alteromonas tetraodonis Simidu et al. 1990 as Pseudoalteromonas tetraodonis comb. Nov. and emendation of description. International journal of systematic and evolutionary microbiology, 51(3), pp.1071-1078. doi: 10.1099/00207713-51-3-1071
Judoamidjojo, M., Darwis, A.A. & Sa’id, E.G., 1990. Teknologi Fermentasi. Rajawali Pers.
Kanekar, P.P. & Kanekar, S.P., 2022. Halophilic and Halotolerant Microorganisms. In Diversity and Biotechnology of Extremophilic Microorganisms from India. Microorganisms for Sustainability. Singapore: Springer, pp.13-69. doi: 10.1007/978-981-19-1573-4_2
Kresnadipayana, D. & Lestari, D., 2017. Penentuan Kadar Boraks pada Kurma (Phoenix dactylifera) dengan metode Spektrofotometri UV-vis. Jurnal Wiyata, 4(1), pp.23-30.
Kumar, S., Dasu, V.V. & Pakshirajan, K., 2010a. Localization and production of novel L-asparaginase from Pectobacterium carotovorum MTCC 1428. Process Biochemistry, 45(2), pp.223-229. doi: 10.1016/j.procbio.2009.09.011
Kumar, S., Dasu, V.V. & Pakshirajan, K., 2010b. Purification and characterization of glutaminase-free L-asparaginase from Pectobacterium carotovorum MTCC 1428. Bioresource Technology, 102(2011), pp.2077-2082. doi: 10.1016/j.biortech.2010.07.114
Kurniawati, L., Kusdiyantini, E. & Wijanarka, W., 2019. Pengaruh variasi suhu dan waktu inkubasi terhadap aktivitas enzim selulase dari bakteri Serratia marcescens. Jurnal Akademika Biologi, 8(1), pp.1-9.
Kusumaningati, M.A., Nurhatika, S. & Muhibuddin, A., 2013. Pengaruh konsentrasi inokulum bakteri Zymomonas mobilis dan lama fermentasi pada produksi etanol dari sampah sayur dan buah Pasar Wonokromo Surabaya. Jurnal Sains dan Seni ITS, 2(2), pp.218-223. doi: 10.12962/j23373520.v2i2.4298
Lakshmi, A.V., Sheeja, L. & Devi Mari, S., 2020. Screening and identification of asparginase and glutaminase producing halophilic bacteria from natural saline habitats. International Journal on Recent Advancement in Biotechnology & Nanotechnology, 3(1), pp.34-53.
Lander, E.S. et al., 2001. Initial sequencing and analysis of the human genome. Nature, 409(6822), pp.860-921. doi: 10.1038/35057062
Lazar Jr., I., Lazar-Horvath, E. & Lazar Sr., I., 2023, 'GelAnalyzer 23.1.1 (23.1.1)', in GelAnalyzer.com, viewed from www.gelanalyzer.com
Leboffe, M.J. & Pierce, B.E., 2012. Brief Microbiology Laboratory Theory & Application (2nd Edition), Englewood: Morton Publishing.
Lowry, O.H. et al., 1951. Protein measurement with the folin phenol reagent. Journal of Biological Chemistry, 193(1), pp.265-275. doi: 10.1016/S0021-9258(19)52451-6
Mahjani & Dwi, H.P., 2020. Growth Curve of Endophyte Bacteria Andalas Plant (Morus mocroura Miq,) B.J.T A-6 Isolate. Serambi, 5(1), pp.29-32. doi: 10.24036/5692RF00
Mardalena, 2016. Fase Pertumbuhan Isolat Bakteri Asam Laktat (BAL) Tempoyak Asal Jambi yang Disimpan Pada Suhu Kamar. Jurnal Sain Peternakan Indonesia, 11(1), pp.58-66. doi: 10.31186/jspi.id.11.1.58-66
Moorcraft, S.Y., Gonzalez, D. & Walker, B.A., 2015. Understanding next generation sequencing in oncology: A guide for oncologists. Critical Reviews in Oncology/Hematology, 96(3), pp.463-474. doi: 10.1016/j.critrevonc.2015.06.007
Muzuni, M. et al., 2024. Skrining Bakteri Termohalofilik Penghasil L-asparaginase dari Sumber Air Panas Wawolesea Sulawesi Tenggara dan Uji Aktivitas Enzimnya. ALCHEMY Jurnal Penelitian Kimia, 20(1), pp.12-21. doi: 10.20961/alchemy.20.1.73523.12-21
Nagarethinam, S. et al., 2012. Microbial L-Asparaginase and its future prospects. Asian Journal of Medical Research, 1(4), pp.159-160.
Pieters, R. et al., 2011. L-asparaginase treatmeant in acute lymphoblastic leukemia: a focus on Erwina asparaginase. Cancer, 117(2), pp.238-249. doi: 10.1002/cncr.25489
Prihanto, A.A. & Wakayama, M., 2016. Chapter One - Marine Microorganism: An Underexplored Source of l-Asparaginase. Advances in Food and Nutrition Research, 79, pp.1-25. doi: 10.1016/bs.afnr.2016.07.005
Prihanto, A.A. et al., 2018. Identifikasi Bakteri Endofit Mangrove Api-Api Putih (Avicennia marina) Penghasil Enzim L-asparaginase. Jurnal Ilmiah Perikanan Dan Kelautan, 10(2), pp.84-90. doi: 10.20473/jipk.v10i2.10467
Prihanto, A.A., Ardiansyah, R.F. & Pradarameswari, K.A., 2019. Identifikasi molekuler bakteri endofit penghasil L-asparaginase yang diisolasi dari mangrove Buta-buta (Excoecaria agallocha). Jurnal Pascapanen dan Bioteknologi Kelautan dan Perikanan, 14(1), pp.29–34. doi: 10.15578/jpbkp.v14i1.577
Qeshmi, F.I. et al., 2014. Persian Gulf is a bioresource of potent L-asparaginase producing bacteria: Isolation & molecular differentiating. International Journal of Environmental Research, 8(3), pp.813-818. doi: 10.22059/ijer.2014.774
Qeshmi, F.I. et al., 2018. Marine microbial L-asparaginase: biochemistry, molecular approaches and applications in tumor therapy and in food industry. Microbiological Research, 208, 99-112. doi: 10.1016/j.micres.2018.01.011
Qeshmi, F.I. et al., 2022. Production of a Novel Marine Pseudomonas aeruginosa Recombinant L-Asparaginase: Insight on the Structure and Biochemical Characterization. Marine Biotechnology, 24, pp.599-613. doi: 10.1007/s10126-022-10129-9
Ratnadewi, A.A.I. et al., 2017. Exploration of broth chicken gut as growth media of escherichia coli bl21 pet-endo for endo-β-1, 4-d-xylanase production. Alchemy Jurnal Penelitian Kimia, 13(2), pp.191-204.
Reimer, L.C. et al., 2022. BacDive in 2022: The knowledge base for standardized bacterial and archaeal data. Nucleic Acids Research, 50(D1), pp.D741–D746. doi: 10.1093/nar/gkab961
Risna, Y.K. et al., 2022. Kurva Pertumbuhan Isolat Bakteri Asam Laktat dari Saluran Pencernaan Itik Lokal Asal Aceh. Jurnal Peternakan Indonesia, 24(1), pp.1-7. doi: 10.25077/jpi.24.1.1-7.2022
Ruiz, B. et al., 2010. Production of microbial secondary metabolites: regulation by the carbon source. Critical Reviews in Microbiology, 36(2), pp.146-167. doi: 10.3109/10408410903489576
Sambrook, J., Fritsch, E.F. & Maniatis, T., 1989. Molecular cloning: a laboratory manual (2nd ed.). United States: Cold Spring Harbor Laboratory Press.
Sanger, F., Nicklen, S. & Coulson, A.R., 1977. DNA sequencing with chain-terminating inhibitors. Proceedings of the National Academy of Sciences of the United States of America, 74(12), pp.5463-5467. doi: 10.1073/pnas.74.12.5463
Saropah, D.A., Jannah, A. & Maunatin, A., 2012. Kinetika reaksi enzimatis ekstrak kasar enzim selulase bakteri selulolitik hasil isolasi dari bekatul. ALCHEMY: Journal of Chemistry, 2(1), pp.34-45. doi: 10.18860/al.v0i0.2297
Saxena, A., Upadhyay, R. & Kango, N., 2015. Isolation and identification of actinomycetes for production of novel extracellular glutaminase free L-asparaginase. Indian Journal of Experimental Biology, 53(12), pp.786-793.
Scopes, R.K., 1994. Protein Purification: Principles and Practice (3rd edition), New York: Springer New York.
Shrivastava, A. et al., 2016. Recent developments in L-asparaginase discovery and its potential as anticancer agent. Critical Reviews in Oncology/Hematology, 100, pp.1-10. doi: 10.1016/j.critrevonc.2015.01.002
Simidu, U. et al., 1990. Taxonomy of four marine bacterial strains that produce tetrodotoxin. International Journal of Systematic Bacteriology, 40(4), pp.331-336. doi: 10.1099/00207713-40-4-331
Stackebrandt, E. & Goebel, B.M., 1994. Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. International Journal of Systematic Bacteriology, 44(4), pp.846-849. doi: 10.1099/00207713-44-4-846
Suharyono, S., Rizal, S. & Kurniadi, M., 2012. Pertumbuhan L. casei pada berbagai lama fermentasi minuman sinbiotik dari ekstrak cincau hijau (Premna oblongifolia merr). Jurnal Teknologi Hasil Pertanian, 5(2), pp.117-128. doi: 10.20961/jthp.v0i0.13564
Sulistiyani, T.R. & Kusumawati, D.I., 2019. Keragaman bakteri endofit penghasil Lasparaginase bebas L-glutaminase. Jurnal Kefarmasian Indonesia, 9(1), pp.28-39. doi: 10.22435/jki.v9i1.1302
Tamura, K., Stecher, G. & Kumar, S., 2021. MEGA11: Molecular Evolutionary Genetics Analysis Version 11. Molecular Biology and Evolution, 38(7), pp.3022-3027. doi: 10.1093/molbev/msab120
Umniyati, S., Astuti., B.O. & Drajat, P., 2009. Pengaruh Garam Empedu Terhadap Pertumbuhan dan Produksi Asam Laktat Streptococcus sp Dari CYME Usus Halus Ayam Broiler Strain Lohman. Prosiding Seminar Nasional Penelitian, Pendidikan Dan Penerapan MIPA, Universitas Negeri Yogyakarta.
Vogel, A.I., 1951. A Text-book of Quantitative Inorganic Analysis (2nd edition), Longmans, Green and Co.
Waterborg, J.H., 2009. The Lowry Method for Protein Quantitation. In The Protein Protocols Handbook. Springer Protocols Handbooks. Totowa, NJ: Humana Press, pp.7-10. doi: 10.1007/978-1-59745-198-7_2
Wijanarka, W., Kusdiyantini, E. & Parman, S., 2016. Screening Cellulolytic Bacteria from the Digestive Tract Snail (Achatina fulica) and Test the Ability of Cellulase Activity. Biosaintifika: Journal of Biology & Biology Education, 8(3), pp.386-392. doi: 10.15294/biosaintifika.v8i3.7263
Zilda, D.S. et al., 2021. Penapisan dan identifikasi bakteri penghasil agarase dari sampel sedimen laut Bara Caddi, Sulawesi Selatan. Jurnal Pascapanen dan Bioteknologi Kelautan dan Perikanan, 16(1), pp.11-21. doi: 10.15578/jpbkp.v16i1.699
Zuo, S. et al., 2014. Recent research progress on microbial L-asparaginases. Applied Microbiology and Biotechnology, 99(3), pp.1069-1079. doi: 10.1007/s00253-014-6271-9