Diversity of Santigi (Pemphis acidula J.R.Forst. & G.Forst.), A Mangrove Association in Tomini Bay, Sulawesi, Indonesia
Dewi Wahyuni K. Baderan(1*), Sukirman Rahim(2), Melisnawati H. Angio(3), Muh. Nur Akbar(4), Magfirahtul Jannah(5), Yuliana Retnowati(6), Ramli Utina(7)
(1) Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Negeri Gorontalo, Jl. Prof. Dr. Ing. B.J. Habibie, Bone Bolango 96554, Gorontalo, Indonesia
(2) Wallacea Research Center for Biodiversity Conservation and Climate Change, Universitas Negeri Gorontalo, Jl. Jend. Sudirman No.6, Gorontalo City 96128, Gorontalo, Indonesia
(3) Research Center for Plant Conservation and Botanic Gardens and Forestry, National Research and Innovation Agency, Jl. Ir. H. Juanda 13, Bogor 16122, West Java, Indonesia
(4) Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Negeri Gorontalo, Jl. Prof. Dr. Ing. B.J. Habibie, Bone Bolango 96554, Gorontalo, Indonesia
(5) Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Negeri Gorontalo, Jl. Prof. Dr. Ing. B.J. Habibie, Bone Bolango 96554, Gorontalo, Indonesia
(6) Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Negeri Gorontalo, Jl. Prof. Dr. Ing. B.J. Habibie, Bone Bolango 96554, Gorontalo, Indonesia
(7) Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Negeri Gorontalo, Jl. Prof. Dr. Ing. B.J. Habibie, Bone Bolango 96554, Gorontalo, Indonesia; Research Center of Coastal Ecology Based on Local Wisdom (PKEPKL), Department of Biology, Universitas Negeri Gorontalo, Jl. Prof. Dr. Ing. B.J. Habibie, Bone Bolango 96554, Gorontalo, Indonesia
(*) Corresponding Author
Abstract
Pemphis acidula is a wild plant in rocky or sandy coastal areas and mangrove ecosystems. Different geographic characteristics may affect plant adaptability and have an impact on the emergence of various genotypes. This study was performed to reveal the phenetic relationship and genetic variation of P. acidula in 3 different areas in Tomini Bay, Gorontalo Province, Indonesia. We took 3 samples from each location and analysed them using 14 morphological characters and molecular approaches based on ISSR markers and ITS gene. The results showed that P. acidula on Olele had bigger sizes in some morphological features compared to the plants in other study areas. The phenetic analysis showed that P. acidula at Biluhu and Dulanga were more closely related, although P. acidula at the 3 locations had 100% similarity. Genetic variation analysis showed the highest genetic similarity based on ISSR markers was found in Dulanga and Biluhu samples (76.8%). Phylogenetic based on ITS gene revealed that Olele samples were in the same clade with P. acidula accession from GenBank (genetic distance 0-0.19%), while Biluhu samples were a sister group (genetic distance 24.97-25.03%) even though their percentage identity corresponds to P. acidula (81.34%). Plant adaptation to different habitat conditions may affect the genetic diversity of P. acidula.
Keywords
Full Text:
PDFReferences
Abdelhamid, K. et al., 2014. Determination of the Effect of the Environment on the Genetic Polymorphism in the Genus of Tamarix Using the Molecular Marker (Simple Sequence Repeats “PCR-SSR” (In Arid Areas of the Khenchela Region (Eastern of Algeria). International Journal of Sciences: Basic and Applied Research (IJSBAR) International Journal of Sciences: Basic and Applied Research, 16(2), pp.1–10.
Backer, C.A. & van den Brink, R.C.B., 1965. Flora of Java (Spermatophytes only), Netherlands: N.V.P. Noordhoff-Groningen.
Baderan, D.W.K. & Angio, M., 2019. Index Measurement of Biodiversity from a Geosite of Gorontalo Province (A Pioneer of Gorontalo Geopark). A Final Report of the Provincial Bappeda of Gorontalo, Gorontalo, Indonesia: Development Planning Agency at Sub-National Level of Gorontalo Province.
Baderan, D.W.K., Retnowati, Y. & Utina, R., 2022. Conservation threats of Pemphis acidula in the Tomini Bay area, Gorontalo, Indonesia. IOP Conference Series: Earth and Environmental Science. IOP Conf. Ser.: Earth Environ. Sci., 976, 012058. doi: 10.1088/1755-1315/976/1/012058.
Baderan, D.W.K. & Utina, R., 2021. Biodiversity of Flora and Fauna of East Biluhu Beach (a review of coastal ecology-environment), Yogyakarta, Indonesia: Deepublish.
Baderan, D.W.K., Utina, R. & Lapolo, N., 2018. Vegetation structure, species diversity, and mangrove zonation patterns in the Tanjung Panjang Nature Reserve Area, Gorontalo, Indonesia. Int. J. Appl. Biol., 2(2), pp.1–12. doi: 10.20956/ijab.v2i2.5752.
Berg, C.C. & Corner, E.J.H., 2005. Flora Malesiana Series I Moraceae: Ficeae. Spermatophyta, 17(2), pp.1–702.
Bijmoer, R, Scherrenberg, M, & Creuwels, J, 2023. Naturalis Biodiversity Center (NL) - Botany. Naturalis Biodiversity Center. doi: 10.15468/ib5ypt
Cunningham, A.B. et al., 2017. Opportunities, barriers and support needs: micro-enterprise and small enterprise development based on non-timber products in eastern Indonesia. Australian Forestry, 80(3), pp.161–177. doi: 10.1080/00049158.2017.1329614.
Dittmann, S. et al., 2022. Effects of Extreme Salinity Stress on a Temperate Mangrove Ecosystem. Frontiers in Forests and Global Change, 5, 859283. doi: 10.3389/ffgc.2022.859283.
Duncan, T. & Baum, B.R., 1981. Numerical Phenetics: Its Uses in Botanical Systematics. Annual Review of Ecology and Systematics, 12, pp.387–404. doi: https://doi.org/10.1146/annurev.es.12.110181.002131.
Ellison, J. et al., 2010, 'Pemphis acidula' in The IUCN Red List of Threatened Species, viewed 21 June 2022, from https://www.iucnredlist.org/species/178838/7622565
Ezekiel, C.N. et al., 2011. Genetic diversity in 14 tomato (Lycopersicon esculentum Mill.) varieties in Nigerian markets by RAPD-PCR technique. Afr. J. Biotechnol., 10(25), pp.4961–4967.
GBIF Secretariat: GBIF Backbone Taxonomy, 'Pemphis acidula J.R.Forst. & G.Forst.' in Checklist dataset, viewed 20 June 2022, from https://www.gbif.org/species/3188706
George, A.S., 1990. Flora of Australia George AS, ed., Canberra: Australian Government Publishing Service.
Giesen, W. et al., 2006. Mangrove Guidebook for Southeast Asia, Bangkok: FAO and Wetlands International.
Goutham-Bharathi, M.P. et al., 2015. Notes on Pemphis acidula J.R. Forst. & G. Forst. (Myrtales: Lythraceae) from Andaman Islands, India. Journal of Threatened Taxa, 7(8), pp.7471–7474. doi: 10.11609/JoTT.o4146.7471-4.
Graham, A. et al., 1987. Palynology and Systematics of The Lythraceae. II. Genera Haitia Through Peplis. American Journal of Botany, 74(6), pp.829–850. doi: 10.1002/j.1537-2197.1987.tb08687.x.
Hamza, H. et al., 2013. Comparison of the effectiveness of ISSR and SSR markers in determination of date palm (Phoenix dactylifera L.) agronomic traits. Aust. J. Cr. Sci., 7(6), pp.763–769.
Harris, J.G. & Harris, M.W., 2001. Plant Identification Terminology, Utah: Spring Lake Publishing.
Ibrahim, E.A., 2021. Genetic diversity in Egyptian bottle gourd genotypes based on ISSR markers. Ecological Genetics and Genomics, 18, 100079. doi: 10.1016/j.egg.2021.100079.
Irwansah, Sugiyarto & Mahajoeno, E., 2017. Mangrove diversity in the Serewe Gulf of Lombok Island West Nusa Tenggara. AIP Conference Proceedings., 1868, 090005. doi: 10.1063/1.4995197.
IUCN (International Union of Conservation of Nature), 2022, 'Red List of Threatened Species', in IUCN Red List, viewed 20 June 2022, from https://www.iucnredlist.org/
Kodikara, K.A.S. et al., 2018. The effects of salinity on growth and survival of mangrove seedlings changes with age. Acta Botanica Brasilica, 32(1), pp.37–46. doi: 10.1590/0102-33062017abb0100.
Kumar, S. et al., 2018. MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms F. U. Battistuzzi, ed. Molecular Biology and Evolution, 35(6), pp.1547–1549. doi: 10.1093/molbev/msy096.
Louati et al., 2019. Genetic, Morphological, and Biochemical Diversity of Argan Tree (Argania spinosa L.) (Sapotaceae) in Tunisia. Plants, 8(9), 319. doi: 10.3390/plants8090319.
Manek, L.M. & Puay, Y., 2020. Analysis of the pattern of spatial distribution of stigi (Pemphis acidula) species in the Meubesi Nature Reserve, Malaka Regency, East Nusa Tenggara. Jurnal Biotropikal Sains, 17(3), pp.24–32.
Martida, V. & Pharmawati, M., 2019. Comparison of DNA Yield from Different Plant Materials of Plumeria sp. (Apocynaceae). Journal of Advances in Tropical Biodiversity and Environmental Sciences, 3(1), pp.8–11. doi: 10.24843/ATBES.2019.v03.i01.p03.
Nguyen, X. et al., 2017. DNA BARCODING OF THE TRUE MANGROVE PLANTS, A SELECTION OF GENETIC MARKERS. Journal of Marine Science and Technology, 17(4A), pp.311–321. doi: 10.15625/1859-3097/17/4A/13230.
Ningrum, W.D.A. et al., 2020. Genetic variability of Begonia longifolia Blume from Indonesia based on Nuclear DNA internal transcribed spacer (ITS) sequence data. Biodiversitas Journal of Biological Diversity, 21(12), pp.5778–5785. doi: 10.13057/biodiv/d211239.
POWO (Plants of the World Online), 2022, 'Pemphis acidula J.R.Forst. & G.Forst' in Plants of the World Online: Royal Botanic Garden Kew, viewed 20 June 2022, from https://powo.science.kew.org/taxon/urn:lsid:ipni.org:names:554064-1
Putri, N.R.A. et al., 2023. Genetic Variation of Butternut Squash (Cucurbita moschata Duchesne) based on Inter-Simple Sequence Repeat. Journal of Tropical Biodiversity and Biotechnology, 8(1), jtbb77228. doi: 10.22146/jtbb.77228.
Qin, Y. et al., 2017. Molecular thresholds of ITS2 and their implications for molecular evolution and species identification in seed plants. Scientific Reports, 7(1), 17316. doi: 10.1038/s41598-017-17695-2.
Raji, R. & Siril, E.A., 2021. Genetic diversity analysis of promising Ceylon olive (Elaeocarpus serratus L.) genotypes using morphological traits and ISSR markers. Current Plant Biology, 26, 100201. doi: 10.1016/j.cpb.2021.100201.
Ramzan, M. et al., 2020. Assessment of Inter simple sequence repeat (ISSR) and simple sequence repeat (SSR) markers to reveal genetic diversity among Tamarix ecotypes. Journal of King Saud University - Science, 32(8), pp.3437–3446. doi: 10.1016/j.jksus.2020.10.003.
Rao, T. & Ellis, J.L., 1995. Flora of Lakshadweep islands off the Malabar coast, peninsular India, with emphasis on phytogeographical distribution of plants. J. Econ. Taxon. Bot., 19, pp.235–250.
Seng, T.Y. et al., 2013. Recycling of superfine resolution agarose gel. Genetics and Molecular Research, 12(3), pp.2360–2367. doi: 10.4238/2013.March.11.1.
Sevindik, E. & Efe, F., 2021. Molecular Genetic Diversity and Phylogenetic Analyses of Punica granatum L. Populations Revealed by ISSR Markers and Chloroplast (cpDNA) trnL-F Region. Erwerbs-Obstbau, 63(3), pp.339–345. doi: 10.1007/s10341-021-00581-7.
Singh, A. et al., 2014. Efficiency of SSR, ISSR and RAPD markers in molecular characterization of mungbean and other Vigna species. INDIAN J BIOTECHNOL, 13, pp.81–88.
Takele, D., Tsegaw, M. & Indracanti, M., 2021. Genetic diversity assessment in some landraces and varieties of date palm (Phoenix dactylifera L.) from Afar Region, Ethiopia, using ISSR markers. Ecological Genetics and Genomics, 19, 100085. doi: 10.1016/j.egg.2021.100085.
The Plant List, 2022, 'Pemphis acidula J.R. Forst. & G. Forst' in The Plant List, viewed 20 June 2022, from http://www.theplantlist.org/tpl1.1/record/tro-19200012
Utina, R. et al., 2019. The composition of mangrove species in coastal area of Banggai district, central Sulawesi, Indonesia. Biodiversitas, 20(3), pp.840–846. doi: 10.13057/biodiv/d200330.
Wang, H. et al., 2012. Genetic diversity and relationship of global faba bean (Vicia faba L.) germplasm revealed by ISSR markers. Theoretical and Applied Genetics, 124(5), pp.789–797. doi: 10.1007/s00122-011-1750-1.
de Wilde, W.J.J.O. & Duyfjes, B.E.E., 2016. Flora Malesiana, Djakarta: Noordhoff-Kolff N.V.
DOI: https://doi.org/10.22146/jtbb.83889
Article Metrics
Abstract views : 865 | views : 746Refbacks
- There are currently no refbacks.
Copyright (c) 2024 Journal of Tropical Biodiversity and Biotechnology
This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.
Editoral address:
Faculty of Biology, UGM
Jl. Teknika Selatan, Sekip Utara, Yogyakarta, 55281, Indonesia
ISSN: 2540-9581 (online)