Biomarkers improving decisions making in clinical trials: explanations and examples

  • Dhea Kirana Faiha Biotechnology Study Program, Universitas Gadjah Mada, Yogyakarta https://orcid.org/0000-0002-5860-9711
  • Florentina Bety Indah Lupitasari Biotechnology Study Program, Universitas Gadjah Mada, Yogyakarta
  • Humairah Fitria Biotechnology Study Program, Universitas Gadjah Mada, Yogyakarta
  • Umi Salamah Biotechnology Study Program, Universitas Gadjah Mada, Yogyakarta
  • Vidia Ajeng Supriyati Biotechnology Study Program, Universitas Gadjah Mada, Yogyakarta
Keywords: biomarker, clinical trial, decision making, diagnostic, predictive

Abstract

Biomarkers are originate from physiological processes, medical imaging, tissues, or chemicals. They are potentially useful indicators for every type of disease and have important roles on drug discovery and development, disease progression tracking, prognosis, diagnosis, and therapy response. Biomarkers provide precision measurement results, lower bias result, also faster early warning signal. Therefore, they can be used as a basis for clinical decisions. Biomarkers found in tissues, blood, and other bodily fluids. Depend on their purpose of usage, biomarkers can be categorized of diagnostic, prognostic to predicts disease progression, pharmacodynamic to measures the effect of a drug on a biological system, and predictive to predicts response to a specific treatment. In clinical trials, biomarker can be used as basic of decisions making. Therefore, several steps required to incorporate biomarkers in clinical trials are determine roles and functions of biomarkers, choose specific test and laboratory according to purpose of trial, describe test and protocol, carry out and report analysis validation appropriate for trial, implement test in trial, and plan sustainability of biomarker uses in future research. Biomarker have been used as basis of decision making in clinical trials in phase I-IV to recruit participants or making a decision whether the trial will be terminated or continued. In this review, we outlined general explanations about molecular biomarkers, step of biomarkers incorporation in clinical trial, and examples of several studies using molecular biomarkers in clinical trial as basis of decision-making.

References

Shayne CG. Drug discovery in the 21st century. In: Shayne CG editor. Drug Discovery Handbook. New Jersey: Wiley Press 2005;1-10.

Smith GC, OíDonnel JT. The process of new drug discovery and development, Eds., 2nd ed. New York: Informa Healthcare, 2006.

Fountzilas E, Tsimberidou AM, Vo HH, Kurzrock R. Clinical trial design in the era of precision medicine. Genome Med 2022; 14(1):101.

https://doi.org/10.1186/s13073-022-01102-1

Wang J, Chang M. Innovative designs for biomarker-guided trials. In: Fang L, Su C, eds. Statistical Methods in Biomarker and Early Clinical Development. Cham: Springer 2019; 53-65.

https://doi.org/10.1007/978-3-030-31503-0_4

Sun D, Gao W, Hu H, Zhou S. Why 90% of clinical drug development fails and how to improve it? Acta Pharm Sin B 2022; 12(7):3049-62.

https://doi.org/10.1016/j.apsb.2022.02.002

Sarhadi VK, Armengol G. Molecular biomarkers in cancer. Biomolecules 2022; 12(8):1021.

https://doi.org/10.3390/biom12081021

Gromova M, Vaggelas A, Dallmann G, Seimetz D. Biomarkers: opportunities and challenges for drug development in the current regulatory landscape. Biomark Insights 2020; 15:1177271920974652.

https://doi.org/10.1177/1177271920974652

Seimetz D. The key to successful drug approval: an effective regulatory strategy. Life Science Venturing 2017; 139-47.

https://doi.org/10.1007/978-3-658-06382-5_7

Hartl D, de Luca V, Kostikova A, Laramie J, Kenedy S, Ferrero E, et al. Translational precision medicine: an industry perspective. J Transl Med 2021; 19(1):245.

https://doi.org/10.1186/s12967-021-02910-6

Bodaghi A, Fattahi N, Ramazani A. Biomarkers: promising and valuable tools towards diagnosis, prognosis, and treatment of Covid-19 and other diseases. Heliyon 2023; 9(2):e213313.

https://doi.org/10.1016/j.heliyon.2023.e13323

García-Gutierrez MS, Navarrete F, Sala F, Gasparyan A, Austrich-Olivares A, Manzanares J. Biomarkers in psychiatry: concept, definition, types and relevance to the clinical reality. Front Psychiatr 2020; 11:432.

https://doi.org/10.3389/fpsyt.2020.00432

Aronson JK. Biomarkers and surrogate endpoints. Br J Clin Pharmacol 2005; 59(5):491-4.

https://doi.org/10.1111/j.1365-2125.2005.02435.x

U.S. Food and Drug Administration. Fast track, breakthrough therapy, accelerated approval, priority review 2015.

www.fda.gov/forpatients/approvals/fast/ucm20041766.htm

Gramont AD, Watson S, Ellis LM, Rodon J, Tabernero J, Gramont AD, et al. Pragmatic issues in biomarker evaluation for targeted therapies in cancer. Nat Rev Clin Oncol 2015; 12(4):197-212.

https://doi.org/10.1038/nrclinonc.2014.202

Mert DG, Terzi H. Mean platelet volume in bipolar disorder: the search for an ideal biomarker. Neuropsychiatric Dis Treat 2016; 12:2057-62.

https://doi.org/10.2147/NDT.S112374

Wan-Ibrahim WI, Singh VA, Hashim OH, Rahman PAS. Biomarkers for bone tumors: discovery from genomics and proteomics studies and their challenges. Mol Med 2015; 21(1):861-72.

https://doi.org/10.2119/molmed.2015.00183

Louie AD, Huntington K, Carlsen L, Zhou L, El-Deiry WS. Integrating molecular biomarker inputs into development and use of clinical cancer therapeutics. Front Pharmacol 2021; 12:747194.

https://doi.org/10.3389/fphar.2021.747194

Mayeux R. Biomarkers: potential uses and limitations. NeuroRx 2004; 1(2):182-8

Https://doi.org/10.1602/neurorx.1.2.182

Das S, Dey MK, Devireddy R, Gartia MR. Biomarkers in cancer detection, diagnosis, and prognosis. Sensors 2023; 24(1):37.

https://doi.org/10.3390/s24010037

Louie AD, Huntington K, Carlsen L, Zhou L, El-Deiry WS. Integrating molecular biomarker inputs into development and use of clinical cancer therapeutics. Front Pharmacol 2021; 12:747194.

https://doi.org/10.3389/fphar.2021.612132

Duque G, Manterola C, Otzen T, Arias C, Palacios D, Mora M, et al. Cancer biomarkers in liquid biopsy for early detection of breast cancer: a systematic review. Clin Med Insights Oncol 2022; 16:11795549221134811.

https://doi.org/10.1177/11795522221179552

Emmert-Streib F, Manjang K, Dehmer M, Yli-Harja O, Auvinen A. Are there limits in explainability of prognostic biomarkers? Scrutinizing biological utility of established signatures. Cancers (Basel) 2021; 13(20):5087.

https://doi.org/10.3390/cancers13205223

Felder M, Kapur A, Gonzalez-Bosquet J, Horibata S, Heintz J, Albrecht R, et al. MUC16 (CA125): tumor biomarker to cancer therapy, a work in progress. Mol Cancer 2014; 13:129.

https://doi.org/10.1186/1476-4598-13-129

Su SB, Qin SY, Chen W, Luo W, Jiang HX. Carbohydrate antigen 19-9 for differential diagnosis of pancreatic carcinoma and chronic pancreatitis. World J Gastroenterol 2015; 21(14):4323-33.

https://doi.org/10.3748/wjg.v21.i14.4323

Jackson RC. Pharmacodynamic modelling of biomarker data in oncology. ISRN Pharmacol 2012; 2012:590626.

https://doi.org/10.1155/2012/324721

Odintsov I, Sholl LM. Prognostic and predictive biomarkers in non-small cell lung carcinoma. Pathology 2024; 56(2):192-204.

https://doi.org/10.1016/j.pathol.2023.11.006

Swain SM, Shastry M, Hamilton E. Targeting HER2-positive breast cancer: advances and future directions. Nat Rev Drug Discov 2023; 22(2):101-26.

https://doi.org/10.1038/s41573-022-00579-0

Salawu A, Hernando-Calvo A, Chen RY, Araujo DV, Oliva M, Liu ZA, et al. Impact of pharmacodynamic biomarkers in immuno-oncology phase 1 clinical trials. Eur J Cancer 2022; 173:167-77.

https://doi.org/10.1016/j.ejca.2022.06.045

Kandi V, Vadakedath S. Clinical trials and clinical research: a comprehensive review. Cureus 2023; 15(2):e35077.

https://doi.org/10.7759/cureus.35077

Singh N, Vayer P, Tanwar S, Poyet J, Tsaioun K, Villoutreix BO. Drug discovery and development: introduction to the general public and patient groups. Front Drug Discov 2023; 1-11.

https://doi.org/10.3389/fddsv.2023.1201419

Burt T, Young G, Lee W, Kusuhara H, Langer O, Rowland M, et al. Phase 0/microdosing approaches: time for mainstream application in drug development? Nat Rev Drug Discov 2020; 19(11):801-18

https://doi.org/10.1038/s41573-020-0080-x

Yamane N, Igarashi A, Kusama M, Maeda K, Ikeda T, Sugiyama Y. Cost-effectiveness analysis of microdose clinical trials in drug development Drug Metab Pharmacokinet 2013; 28(3):187-95.

https://doi.org/10.2133/dmpk.dmpk-12-rg-044

Tonno DD, Perlin C, Loiacono AC, Giordano L, Martena L, Lagravinese S, et al. Trends of phase I clinical trials in the latest ten years across five European countries. Int J Environ Res Public Health 2022; 19(21):14023.

https://doi.org/10.3390/ijerph192114023

Kirsch DR. Therapeutic drug development and human clinical trials. Biotechnol Entrepren 2014; 315-30. https://doi.org/10.1016/B978-0-12-404730-3.00023-3

Torres-saavedra PA, Winter KA. An overview of phase 2 clinical trial designs. Int J Radiat Oncol Biol Phys 2021; 112(1):22-9.

https://doi.org/10.1016/j.ijrobp.2021.07.1700.

Zhao X, Modur V, Carayannopoulos LN, Laterza OF. Biomarkers in pharmaceutical research. Clin Chem 2015; 61(11):1343-53.

https://doi.org/10.1373/clinchem.2014.231712

Yee LM, Lively TG, McShane LM. Biomarkers in early-phase trials: fundamental issues. Bioanalysis 2018; 10(12):933-44.

https://doi.org/10.4155/bio-2018-0006

Agboyibor C, Dong J, Effah CY, Drokow EK, Pervaiz W, Liu HM. LSD1 as a biomarker and the outcome of its inhibitors in the clinical trial: the therapy opportunity in tumor. J Oncol 2021; 2021:e5512524.

https://doi.org/10.1155/2021/5512524

Cao W, Xing H, Li Y, Tian W, Song Y, Jiang Z, et al. Claudin18.2 is a novel molecular biomarker for tumor-targeted immunotherapy. Biomark Res 2022; 10(1):38.

https://doi.org/10.1186/s40364-022-00385-1

Janjigian YY, Kawazoe A, Yañez P, Li N, Lonardi S, Kolesnik O, et al. The KEYNOTE-811 trial of dual PD-1 and HER2 blockade in HER2-positive gastric cancer. Nature 2021; 600(7890):727-30.

https://doi.org/10.1038/s41586-021-04161-3

Degenhardt T, Fasching PA, Lüftner D, Müller V, Thomssen C, Schem C, et al. PRECYCLE: multicenter, randomized phase IV intergroup trial to evaluate the impact of eHealth-based patient-reported outcome (PRO) assessment on quality of life in patients with hormone receptor positive, HER2 negative locally advanced or metastatic breast cancer treated with palbociclib and an aromatase inhibitor or palbociclib and fulvestrant. Trials 2023; 24(1):338.

https://doi.org/10.1186/s13063-023-07306-z

Dang TO, Ogunniyi A, Barbee MS, Drilon A. Pembrolizumab for the treatment of PD-L1 positive advanced or metastatic non-small cell lung cancer. Expert Rev Anticancer Ther 2016; 16(1):163-20.

https://doi.org/10.1586/14737140.2016.1123626

Merck Sharp, Dohme LLC. A phase III, randomized, double-blind trial comparing trastuzumab plus chemotherapy and pembrolizumab with trastuzumab plus chemotherapy and placebo as first-line treatment in participants with her2 positive advanced gastric or gastroesophageal junction adenocarcinoma (KEYNOTE 811). 2024.

https://clinicaltrials.gov/study/NCT03615326

Published
2025-01-06
Section
Articles