Exploration of Nematophagous Fungi from Coffee Rhizosphere Soil and their Potential as Biological Control Agents against Root-lesion and Root-knot Nematodes
Siwi Indarti(1*), Rinda Fajrin Aldina(2), Donny Widianto(3), Irfan Dwidya Prijambada(4), Rina Maharani(5), Irianti Kurniasari(6), Dirk De Waele(7)
(1) Department Plant Protection, Faculty of Agriculture, Universitas Gadjah Mada, Jln. Flora, Bulaksumur, Depok, Sleman, Yogyakarta 55281 Indonesia
(2) Department Plant Protection, Faculty of Agriculture, Universitas Gadjah Mada, Jln. Flora, Bulaksumur, Depok, Sleman, Yogyakarta 55281 Indonesia
(3) Department of Microbiology, Faculty of Agriculture, Universitas Gadjah Mada, Jln. Flora, Bulaksumur, Depok, Sleman, Yogyakarta 55281 Indonesia
(4) Department of Microbiology, Faculty of Agriculture, Universitas Gadjah Mada, Jln. Flora, Bulaksumur, Depok, Sleman, Yogyakarta 55281 Indonesia
(5) Department Plant Protection, Faculty of Agriculture, Universitas Gadjah Mada, Jln. Flora, Bulaksumur, Depok, Sleman, Yogyakarta 55281 Indonesia
(6) Agricultural Development Polytechnic of Malang, Jln. Dr. Cipto 144 A Bedali, Lawang, Malang, East Java, 65200 Indonesia
(7) Unit for Environmental Sciences and Management, North-West University, Private Bag X6001, Potchefstroom, 2520 South Africa; Laboratory of Tropical Crop Improvement, Department of Biosystems, Faculty of Bioscience Engineering, University of Leuven, Willem de Croylaan 42, Heverlee, 3001, Belgium
(*) Corresponding Author
Abstract
Root-lesion and root-knot nematodes are amongst the most important pathogens of coffee and can cause substantial yield losses and quality reductions. Environmental and health concerns concerning the use of chemical pesticides have increased the need for alternative management strategies against plant-parasitic nematodes. The aim of our study was to isolate and identify nematophagous fungi from nematode-infested coffee production areas and evaluate their potential as biocontrol agents. Our study was carried out in two stages: 1) fungi isolation and evaluation of their ability to affect eggs or vermiform developmental stages of root-lesion and root-knot nematodes; 2) identification of fungal isolates to species level. Eleven fungal isolates were able to affect either the nematode eggs or the vermiform developmental stages. The ability of these fungi to produce extracellular enzymes were also evaluated. This study highlights Indonesian nematode infected coffee rhizosphere soils as a rich source of nematophagous fungi, with eleven isolates showing promises to be used for integrated pest management strategies. Future work should assess field efficacy under local conditions while monitoring impacts on soil food webs and non-target organisms.
Keywords
Full Text:
PDFReferences
Al-Ani, L.K.T., Soares, F.E. de F., Sharma, A., de los Santos-Villalobos, S., Valdivia-Padilla, A.V., & Aguilar-Marcelino, L. (2022). Strategy of Nematophagous Fungi in Determining the Activity of Plant Parasitic Nematodes and Their Prospective Role in Sustainable Agriculture. Frontiers in Fungal Biology, 3, 863198. https://doi.org/10.3389/ffunb.2022.863198
Barnett, H.L., & Hunter, B.B. (1998). Illustrated Genera of Imperfect Fungi. St. Paul, USA: APS Press.
Boisseau, M., & Sarah, J.L. (2008). In Vitro Rearing of Pratylenchidae Nematodes on Carrot Discs. Fruits, 63(5), 307–310. https://doi.org/10.1051/fruits:2008028
Chen, S., & Dickson, D.W. (2004). Biological Control of Nematodes by Fungal Antagonists. In Z.X. Chen, S.Y. Chen, & D.W. Dickson (Eds.), Nematology – Advances and Perspectives. Volume II: Nematode Management and Utilization (pp. 979–1039). Wallingford, UK: CABI Publishing.
Chen, S.Y., Dickson, D.W., & Mitchell, D.J. (2000). Viability of Heterodera glycines Exposed to Fungal Filtrates 1. Journal of Nematology, 32(2), 190–197.
Domsch, K.H., Gams, W., & Anderson, T.H. (1993). Compendium of Soil Fungi. London, UK: Academic Press.
Huang, X., Zhao, N., & Zhang, K. (2004). Extracellular Enzymes Serving as Virulence Factors in Nematophagous Fungi Involved in Infection of the Host. Research in Microbiology, 155(10), 811–816. https://doi.org/10.1016/j.resmic.2004.07.003
Hussey, R.S., & Barker, K.R. (1973). A Comparison of Methods of Collecting Inocula of Meloidogyne spp., Including a New Technique. Plant Disease Reporter, 57(12), 1025–1028.
Indarti, S., Widianto, D., Kim, Y-H., Mulyadi., & Suryanti. (2010). Survey of Egg-and Cyst-parasitic Fungi of Potato Cyst Nematode in Indonesia. ThePlant Pathology Journal,26(1), 32‒36.https://doi.org/10.5423/ppj.2010.26.1.032
Indarti, S., Widianto, D., Mulyadi, M., & Widada, J. (2021). Potato Cyst Nematode-Infected Soil as a Source of Egg and Cyst Parasitic Fungi as Potential Biocontrol Agents. Archives of Phytopathology and Plant Protection, 54(13–14), 850–869. https://doi.org/10.1080/03235408.2020.1857152
Lopez-Llorca, L.V., Maciá-Vicente, J.G., & Jansson, H.-B. (2008). Mode of Action and Interactions of Nematophagous Fungi. In A. Ciancio & K.G. Mukerji (Eds.), Integrated Management and Biocontrol of Vegetable and Grain Crops Nematodes. Integrated Management of Plant Pests and Diseases. (Vol. 2, pp. 51–76). Dordrecht, NL: Springer. https://doi.org/https://doi.org/10.1007/978-1-4020-6063-2_3
Monfort, E., Lopez-Llorca, L.V., Jansson, H.B., & Salinas, J. (2006). In Vitro Soil Receptivity Assays to Egg-parasitic Nematophagous Fungi. Mycological Progress, 5(1), 18–23. https://doi.org/10.1007/s11557-005-0002-7
Nordbring‐Hertz, B., Jansson, H-B., & Tunlid, A. (2006). Nematophagous Fungi. In Encyclopedia of Life Sciences. Wiley. https://doi.org/10.1038/npg.els.0004293
Renčo, M., Gömöryová, E., & Čerevková, A. (2020). The Effect of Soil Type and Ecosystems on the Soil Nematode and Microbial Communities. Helminthologia, 57(2), 129–144. https://doi.org/10.2478/helm-2020-0014
Saikai, K.K., Oduori, C., Situma, E., Njoroge, S., Murunde, R., Kimenju, J.W., Miano, D.W., Haukeland, S., & Coyne, D. (2023). Biocontrol-based Strategies for Improving Soil Health and Managing Plant-parasitic Nematodes in Coffee Production. Frontiers in Plant Science, 14, 1196171.https://doi.org/10.3389/fpls.2023.1196171
Southey, J.F. (1986). Laboratory Methods for Work with Plant and Soil Nematodes. London, UK: Her Majesty’s Stationary Office.
Qureshi, S.A., Ruqqia., Sultana, V., Ara, J., & Ehteshamul-Haque, S. (2012). Nematicidal Potential of Culture Filtrates of Soil Fungi Associated with Rhizosphere and Rhizoplane of Cultivated and Wild Plants. Pakistan Journal of Botany, 44(3), 1041‒1046. Retrieved from https://www.pakbs.org/pjbot/paper_details.php?id=3229
Wiryadiputra, S., & Tran, L.K. (2008). Indonesia and Vietnam. In R.M. Souza (Ed.), Plant-Parasitic Nematodes of Coffee (pp. 277–292). Dordrecht, NL: Springer Science+Business Media B.V. https://doi.org/10.1007/978-1-4020-8720-2
Xalxo, P.C., Karkun, D., & Poddar, A.N. (2013). Rhizospheric Fungal Associations of Root Knot Nematode Infested Cucurbits: In Vitro Assessment of Their Nematicidal Potential. Research Journal of Microbiology, 8(2), 81–91. https://doi.org/10.3923/jm.2013.81.91
Zhang, X., Yang, Y., Liu, L., Sui, X., Bermudez, R.S., Wang, L., He, W., & Xu, H. (2024). Insights into the Efficient Degradation Mechanism of Extracellular Proteases Mediated by Purpureocillium lilacinum. Frontiers in Microbiology, 15, 1404439. https://doi.org/10.3389/fmicb.2024.1404439
Zhou, X., Li, Q., Zhao, J., Tang, K., Lin, J., & Yin, Y. (2007). Comparison of Rapid DNA Extraction Methods Applied to PCR Identification of Medicinal Mushroom Ganoderma spp. Preparative Biochemistry and Biotechnology, 37(4), 369–380. https://doi.org/10.1080/10826060701593282
Article Metrics
Refbacks
- There are currently no refbacks.
Copyright (c) 2025 Jurnal Perlindungan Tanaman Indonesia

This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.
Jurnal Perlindungan Tanaman Indonesia (Indonesian Journal of Plant Protection, Indones. J. Plant Prot.) ISSN 1410-1637 (print), ISSN 2548-4788 (online) is published by the Department of Plant Protection, Faculty of Agriculture, Universitas Gadjah Mada, in collaboration with Entomological Society of Indonesia (Perhimpunan Entomologi Indonesia, PEI) and Indonesian Phytopathological Society (Perhimpunan Fitopatologi Indonesia, PFI). The content of this website is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.
View website statistics


